Reference Panel Sample Details

Category (ANEA, ASEA, etc) Sample Primary ID References
Altai Neanderthal Altai_Neanderthal.DG https://www.nature.com/articles/nature12886
Amur River Hunter Gatherer I1190, I1193, I1194, I1196, I1197, I1206, I3355, I3356, I14819 https://www.nature.com/articles/s41586-021-03336-2
Amur River Hunter Gatherer WQM4, ZLNR-2 https://www.nature.com/articles/s41467-020-16557-2#Sec21
Anatolia Neolithic Farmers I1100, I1102, I1099, I1103, I1101, I1097, I0744, I1096, I1098, I0708, I0745, I0746, I0707, I0709, I0725, I0736, I0726, I0723, I0724, I0727, I1580, I1581, I1583 https://www.nature.com/articles/nature16152
Anatolia Neolithic Farmers Bon001, Bon002, Bon004, Bon005 https://pubmed.ncbi.nlm.nih.gov/27498567/
Anatolia Neolithic Farmers Bar8 https://pubmed.ncbi.nlm.nih.gov/27274049/
Anatolia Neolithic Farmers Bar31 https://pubmed.ncbi.nlm.nih.gov/27274049/
Ancient Australian KP1, KP2 https://www.science.org/doi/10.1126/sciadv.aau5064
Ancient Australian WLH4 https://pubmed.ncbi.nlm.nih.gov/30585290/
Ancient West African I10871 https://www.nature.com/articles/s41586-022-04430-9
Ancient West African I10872 https://www.nature.com/articles/s41586-022-04430-9
Ancient West African I10873 https://www.nature.com/articles/s41586-022-04430-9
Ancient West African I10874 https://www.nature.com/articles/s41586-022-04430-9
ANE AfontovaGora2.SG https://www.nature.com/articles/nature12736
ANE MA1.SG https://www.nature.com/articles/nature12736
ANE AfontovaGora3_d https://www.nature.com/articles/nature17993
ANEA NE20-AR https://www.sciencedirect.com/science/article/pii/S0092867421005754
ANEA Yumin https://www.science.org/doi/10.1126/science.aba0909 , https://www.science.org/doi/10.1126/science.aba0909 , https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/YangSciecne2020Supplement.pdf
ANEA Bianbian https://www.science.org/doi/10.1126/science.aba0909 , https://www.science.org/doi/10.1126/science.aba0909 , https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/YangSciecne2020Supplement.pdf
ANEA Xiaogao https://www.science.org/doi/10.1126/science.aba0909 , https://www.science.org/doi/10.1126/science.aba0909 , https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/YangSciecne2020Supplement.pdf
ANEA Xiaojingshan https://www.science.org/doi/10.1126/science.aba0909 , https://www.science.org/doi/10.1126/science.aba0909 , https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/YangSciecne2020Supplement.pdf
ANEA Boshan https://www.science.org/doi/10.1126/science.aba0909 , https://www.science.org/doi/10.1126/science.aba0909 , https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/YangSciecne2020Supplement.pdf
ANEA DevilsGate2.SG, DevilsGate1.SG, NEO235, NEO236, NEO237, NEO238, NEO239, NEO240 https://www.science.org/doi/10.1126/sciadv.1601877 ,
ASEA MLDG-1704 https://pubmed.ncbi.nlm.nih.gov/35839766/
ASEA Longlin_1 https://www.sciencedirect.com/science/article/pii/S0092867421006358
ASEA Dushan4_1 https://www.sciencedirect.com/science/article/pii/S0092867421006358
ASEA Baojianshan5_M2 https://www.sciencedirect.com/science/article/pii/S0092867421006358
ASEA Qihe3 https://www.sciencedirect.com/science/article/pii/S0092867421006358
ASEA Qihe2 https://www.science.org/doi/10.1126/science.aba0909 , https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/YangSciecne2020Supplement.pdf
ASEA LD1 https://www.science.org/doi/10.1126/science.aba0909 , https://www.science.org/doi/10.1126/science.aba0909
ASEA LD2 https://www.science.org/doi/10.1126/science.aba0909
Baikal HG DA245, DA246, DA247, DA248, DA249, DA250, DA251, DA252, DA253, DA362 https://www.nature.com/articles/s41586-018-0094-2 , https://www.science.org/doi/10.1126/science.aar7711
Basal East Eurasian Tianyuan https://www.cell.com/current-biology/fulltext/S0960-9822(17)31195-8, https://www.nature.com/articles/s41467-020-16557-2#Sec21
Basal East Eurasian BR_Onge-2.DG https://www.nature.com/articles/nature18964
Caucasus Hunter Gatherers SATP.SG https://www.nature.com/articles/ncomms9912
Caucasus Hunter Gatherers KK1.SG https://www.nature.com/articles/ncomms9912
Denisova Denisova.DG https://academic.oup.com/mbe/article/37/3/611/5618728
Dzudzuana NEO283 https://www.nature.com/articles/s41586-023-06865-0
East African HG / Mota I5950 https://pubmed.ncbi.nlm.nih.gov/26449472/
East African Pastoral Neolithic I8758 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8759 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8804 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8809 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8814 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8820 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8830 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8874 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8918 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8919 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I8920 https://www.science.org/doi/10.1126/science.aaw6275
East African Pastoral Neolithic I12384 https://www.science.org/doi/10.1126/science.aaw6275
Eastern European Hunter Gatherer I0211 https://www.nature.com/articles/nature16152
Eastern European Hunter Gatherer I0124 https://www.nature.com/articles/nature16152
Eastern European Hunter Gatherer I0061 https://www.nature.com/articles/nature16152
Hoabinhian La368.SG McColl et al. (2018) doi: 10.1126/science.aat3628
Hoabinhian Ma911.SG https://www.science.org/doi/10.1126/science.aat3628
Iberomaurusian IAM.4 https://www.pnas.org/doi/10.1073/pnas.1800851115
Iberomaurusian IAM.5 https://www.pnas.org/doi/10.1073/pnas.1800851115
Jomon I13882, I13883, I13884, I13886, IK002, JpFu1, JpKa6904, JpKo13, JpKo2, JpOd181, JpOd274 https://www.science.org/doi/10.1126/sciadv.abh2419
Melanesian I4451 https://reich.hms.harvard.edu/sites/reich.hms.harvard.edu/files/inline-files/Vanuatu_published_online_1_1.pdf
Natufian HG I0861, I1072, I1069, I1685, I1687, I1690 https://www.nature.com/articles/nature19310
North America HG CK-13 https://www.science.org/doi/10.1126/science.aar6851
North America HG 19651 https://pubmed.ncbi.nlm.nih.gov/30409807/
North America HG XVII-B-939 https://www.science.org/doi/10.1126/science.aab3884 , https://pmc.ncbi.nlm.nih.gov/articles/PMC3700925/
South Africa HG I9028.SG Skoglund et al. (2017) doi: 10.1016/j.cell.2017.08.049 , https://www.science.org/doi/10.1126/science.aao6266
South Africa HG I9133.SG Skoglund et al. (2017) doi: 10.1016/j.cell.2017.08.049 , https://www.science.org/doi/10.1126/science.aao6266
South Africa HG I9134.SG https://www.cell.com/cell/fulltext/S0092-8674(17)31008-5?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0092867417310085%3Fshowall%3Dtrue
South America HG Anzick.SG Rasmussen et al
South America HG CUN008 https://www.sciencedirect.com/science/article/pii/S0092867418313801
South America HG CP8 https://www.sciencedirect.com/science/article/pii/S0092867418313801
South America HG CP29 https://www.sciencedirect.com/science/article/pii/S0092867418313801
South America HG Sumidouro5 https://www.nature.com/articles/s41559-023-02114-9 , https://pubmed.ncbi.nlm.nih.gov/30409807/
South America HG CP19, CP23, CP26, CP25, CP22, CP18, CP21 https://www.nature.com/articles/s41559-023-02114-9
South America HG I11974 https://pmc.ncbi.nlm.nih.gov/articles/PMC6327247/
Southeast Asian Neolithic Farmer I0627 https://www.science.org/doi/10.1126/science.aat3188 , https://pmc.ncbi.nlm.nih.gov/articles/PMC6476732/
Southeast Asian Neolithic Farmer I1137 https://www.science.org/doi/10.1126/science.aat3188 , https://pmc.ncbi.nlm.nih.gov/articles/PMC6476732/
Vindija Neanderthal Vindija_Neanderthal.DG https://www.science.org/doi/10.1126/science.aao1887
Western Hunter Gatherers Iboussieres25-1 https://www.nature.com/articles/nature25778
Western Hunter Gatherers Iboussieres31-2 https://www.nature.com/articles/nature25778
Western Hunter Gatherers BerryAuBac https://www.nature.com/articles/nature25778
Western Hunter Gatherers Falkenstein https://www.nature.com/articles/nature25778
Western Hunter Gatherers I2158 https://www.nature.com/articles/nature25778
Western Hunter Gatherers Rochedane https://www.nature.com/articles/nature25778
Western Hunter Gatherers I1875 https://www.nature.com/articles/nature25778
Western Hunter Gatherers I0585 https://www.nature.com/articles/nature13673
Western Hunter Gatherers I1507 https://www.nature.com/articles/nature13673
Western Hunter Gatherers Loschbour_published.DG https://www.nature.com/articles/nature13673
Western Hunter Gatherers Bichon.SG https://www.nature.com/articles/ncomms9912
Western Hunter Gatherers I9030 https://www.nature.com/articles/nature17993
Western Hunter Gatherers Chaudardes1_m https://www.nature.com/articles/nature17993
Yakutia HG Kamenka-1, Kamenka-3, N4b2, Yak021 https://www.science.org/doi/10.1126/sciadv.abc4587 , https://www.sciencedirect.com/science/article/pii/S0960982222018929
Yellow River Neolithic Farmers WD-WT5M2 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers WD-WT1H16 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers PLTM313 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers PLTM312 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers PLTM311 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers PLTM310 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers HJTM109 https://www.nature.com/articles/s41467-020-16557-2
Yellow River Neolithic Farmers HJTM107 https://www.nature.com/articles/s41467-020-16557-2
Zagrosian Neolithic Farmers I7527 https://www.science.org/doi/10.1126/science.aat7487
Zagrosian Neolithic Farmers I1290 https://www.nature.com/articles/nature19310
Zagrosian Neolithic Farmers I1944, I1945, I1949, I1951 https://www.nature.com/articles/nature19310
Zagrosian Neolithic Farmers AH1.SG https://www.science.org/doi/10.1126/science.aaf7943
Zagrosian Neolithic Farmers AH2.SG https://www.science.org/doi/10.1126/science.aaf7943
Zagrosian Neolithic Farmers AH4.SG https://www.science.org/doi/10.1126/science.aaf7943
Zagrosian Neolithic Farmers WC1.SG https://www.science.org/doi/10.1126/science.aaf7943
Dinka A_Dinka-4.DG MeyerScience2012
Dinka B_Dinka-3.DG PrueferNature2013
Dinka S_Dinka-1.DG, S_Dinka-2.DG MallickNature2016
Irula mondal_IL-01.SG, mondal_IL-04.SG, mondal_IL-07.SG, mondal_IL-08.SG, mondal_IL-09.SG, mondal_IL-10.SG, mondal_IL-11.SG, mondal_IL-12.SG, mondal_IL-15.SG, mondal_IL-16.SG MondalNatureGenetics2016
Mbuti S_Mbuti-3.DG, S_Mbuti-1.DG, S_Mbuti-2.DG MallickNature2016
Mbuti HGDP00449.DG, HGDP00462.DG, HGDP00463.DG, HGDP00467.DG, HGDP00474.DG, HGDP00476.DG, HGDP00478.DG, HGDP00982.DG, HGDP00984.DG, HGDP01081.DG BergstromScience2020
Mende S_Mende-1.DG, S_Mende-2.DG MallickNature2016
Paniya D36, PNYD1, PNYD3, PNYD9 Behar et al 2010
Paniya PY-1, PY-2, PY-3, PY-5, PY-6, PY-7, PY-9, PY-11, PY-12, PY-14, PY-15, PY-17, PY-18, PY-19, PY-20, PY-21, PY-22, PY-23 Basu et al 2016
Yoruba HGDP00920, HGDP00924, HGDP00925, HGDP00926, HGDP00928, HGDP00929, HGDP00930, HGDP00931, HGDP00932, HGDP00933, HGDP00934, HGDP00935, HGDP00936, HGDP00937, HGDP00938, HGDP00939, HGDP00940, HGDP00941, HGDP00942, HGDP00943, HGDP00944, NA18501, NA18504, NA18505, NA18507, NA18508, NA18516, NA18517, NA18522, NA18852, NA18853, NA18855, NA18856, NA18858, NA18859, NA18861, NA18862, NA18870, NA18871, NA19093, NA19098, NA19099, NA19101, NA19102, NA19116, NA19119, NA19127, NA19128, NA19130, NA19131, NA19137, NA19138, NA19141, NA19143, NA19144, NA19159, NA19160, NA19171, NA19193, NA19201, NA19203, NA19204, NA19206, NA19207, NA19209, NA19210, NA19222, NA19223, NA19238, NA19239 PattersonGenetics2012